STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03078.1PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: dfe:Dfer_4378 polyphosphate:AMP phosphotransferase; PFAM: Polyphosphate kinase 2; SPTR: Polyphosphate:AMP phosphotransferase; TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family. (296 aa)    
Predicted Functional Partners:
AFK01522.1
PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR004677:IPR003468:IPR000883; KEGG: lby:Lbys_2760 cytochrome c oxidase, cbb3-type, subunit I; PFAM: Cytochrome C oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; SPTR: Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome C oxidase, monohaem subunit/FixO.
  
    0.909
AFK01883.1
PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; COGs: COG0855 Polyphosphate kinase; HAMAP: Polyphosphate kinase; InterPro IPR003414; KEGG: dfe:Dfer_4987 polyphosphate kinase; PFAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1.
 
   
 0.822
AFK04975.1
PFAM: Heme NO binding; InterPro IPR011644; KEGG: sli:Slin_6271 heme NO binding domain protein; PFAM: Haem NO binding; SPTR: Heme NO binding domain protein.
   
    0.710
AFK01961.1
PFAM: Radical SAM superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638; KEGG: fjo:Fjoh_4972 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
   
    0.645
AFK04562.1
PFAM: Radical SAM superfamily; Radical SAM N-terminal; TIGRFAM: uncharacterized radical SAM protein YgiQ; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR013704:IPR007197:IPR006638; KEGG: sli:Slin_1403 radical SAM protein; PFAM: Radical SAM N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: UPF0313 protein Slin_1403.
   
    0.645
AFK03818.1
PFAM: Ppx/GppA phosphatase family; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: lby:Lbys_1167 ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase.
 
  
 0.574
AFK03094.1
KEGG: dfe:Dfer_3662 hypothetical protein; SPTR: Putative uncharacterized protein.
   
    0.559
AFK04168.1
KEGG: sli:Slin_3973 hypothetical protein; SPTR: Putative uncharacterized protein.
   
    0.559
AFK01771.1
PFAM: Ppx/GppA phosphatase family; COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: sli:Slin_0096 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase.
 
  
 0.555
AFK03079.1
PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase; COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: phe:Phep_0476 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; SPTR: Peptide methionine sulfoxide reductase MsrA 1; TIGRFAM: Peptide methionine sulphoxide reductase MsrA.
       0.553
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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