STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03172.1Octanoyltransferase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B; COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR000544:IPR004143; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase. (238 aa)    
Predicted Functional Partners:
AFK05388.1
Lipoyl synthase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase; COGs: COG0320 Lipoate synthase; HAMAP: Lipoate synthase; InterPro IPR006638:IPR003698:IPR007197; KEGG: sli:Slin_0446 lipoic acid synthetase; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoic acid synthetase; TIGRFAM: Lipoate synthase.
 
 0.998
AFK04613.1
PFAM: Metallo-beta-lactamase superfamily; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: sli:Slin_3277 beta-lactamase; SPTR: Beta-lactamase domain protein.
 
    
 0.913
AFK02046.1
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: zpr:ZPR_1937 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Toxin-antitoxin system, toxin component, GNAT family.
 
      0.835
AFK03089.1
3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR017568:IPR014030:IPR014031; KEGG: lby:Lbys_2368 3-oxoacyl-(acyl-carrier-protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 2; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2.
    
 0.824
AFK03061.1
Enoyl-(acyl-carrier-protein) reductase (NADH); COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: sli:Slin_5892 enoyl-(acyl-carrier-protein) reductase (NADH); SPTR: Enoyl-(Acyl-carrier-protein) reductase (NADH).
     
  0.800
AFK05039.1
PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein; COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR017453:IPR002930; KEGG: lby:Lbys_0445 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup.
   
 0.762
AFK03090.1
Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein; COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR003231:IPR006163; KEGG: lby:Lbys_2369 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP).
   
 0.733
AFK05209.1
Catalytic domain-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: lby:Lbys_3580 catalytic domaiN-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; SPTR: Catalytic domain-containing prote [...]
 
 
 0.578
AFK03174.1
PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase; COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: sli:Slin_5431 peptide deformylase; PFAM: Formylmethionine deformylase; SPTR: Peptide deformylase 2; TIGRFAM: Formylmethionine deformylase.
  
    0.574
AFK03173.1
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: fbl:Fbal_3737 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, gnat family.
       0.568
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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