STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03264.1PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_0441 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug. (1029 aa)    
Predicted Functional Partners:
AFK03263.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_5673 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.939
AFK02372.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_4947 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.776
AFK03779.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: shg:Sph21_1775 RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Outer membrane protein.
 
 
   0.765
AFK05258.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_3283 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.705
AFK01735.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: sli:Slin_4207 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.692
AFK01998.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: Putative outer membrane protein probably involved in nutrient binding.
 
 
   0.636
AFK03652.1
KEGG: dfe:Dfer_2625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.625
AFK01887.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: dfe:Dfer_4737 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.621
AFK04700.1
PFAM: TonB dependent receptor; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_5196 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor.
  
     0.570
AFK04441.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: RagB/SusD domain-containing protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
 
 
   0.555
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.