STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03352.1PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: cph:Cpha266_0514 major facilitator transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1. (401 aa)    
Predicted Functional Partners:
AFK03351.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: pnu:Pnuc_1540 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR.
       0.631
AFK03353.1
KEGG: fps:FP1030 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.578
AFK02736.1
PFAM: Major Facilitator Superfamily; TIGRFAM: benzoate transport; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: sli:Slin_1556 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1.
  
     0.552
AFK03350.1
Hypothetical protein; PFAM: Trehalose utilisation; COGs: COG3828 conserved hypothetical protein; KEGG: nar:Saro_2320 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.479
AFK03354.1
PKD domain containing protein; PFAM: Cytochrome c; Trehalose utilisation; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: PKD; Cytochrome c, class I; SPTR: Cytochrome c class I.
       0.453
AFK04927.1
General substrate transporter; PFAM: Sugar (and other) transporter; InterPro IPR005828; KEGG: lby:Lbys_1844 major facilitator transporter; PFAM: General substrate transporter; SPTR: Major facilitator transporter.
  
     0.426
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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