STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03354.1PKD domain containing protein; PFAM: Cytochrome c; Trehalose utilisation; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR000601:IPR003088; KEGG: dfe:Dfer_2188 cytochrome c class I; PFAM: PKD; Cytochrome c, class I; SPTR: Cytochrome c class I. (1250 aa)    
Predicted Functional Partners:
AFK01677.1
TatD-related deoxyribonuclease; PFAM: TatD related DNase; COGs: COG1099 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR001130; KEGG: lby:Lbys_0398 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease.
 
     0.727
AFK01680.1
KEGG: lby:Lbys_0401 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.714
AFK01678.1
PFAM: UbiA prenyltransferase family; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: dfe:Dfer_2883 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase.
 
    0.699
AFK01681.1
PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase; COGs: COG1524 Uncharacterized protein of the AP superfamily; InterPro IPR002591; KEGG: dfe:Dfer_2886 type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase.
 
     0.699
AFK01676.1
KEGG: dfe:Dfer_2881 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.652
AFK03353.1
KEGG: fps:FP1030 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.605
AFK03536.1
PFAM: Cytochrome c; InterPro IPR003088; KEGG: cytochrome c class I; PFAM: Cytochrome c, class I; SPTR: Cytochrome c class I.
 
     0.574
AFK02385.1
Heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013427:IPR004155; KEGG: heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region.
 
     0.549
AFK03535.1
PFAM: Domain of Unknown Function (DUF1080); PA14 domain; InterPro IPR010496; KEGG: dfe:Dfer_3235 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein.
 
     0.519
AFK03355.1
KEGG: dfe:Dfer_1508 hypothetical protein; SPTR: Putative uncharacterized protein.
      
0.504
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.