STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03399.1KEGG: cat:CA2559_01745 hypothetical protein; SPTR: Putative uncharacterized protein. (130 aa)    
Predicted Functional Partners:
AFK03400.1
PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: sli:Slin_5441 hypothetical protein; PFAM: Peptidase M14, carboxypeptidase A; SPTR: Putative uncharacterized protein.
       0.661
AFK03401.1
KEGG: lby:Lbys_2642 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.661
AFK03398.1
PFAM: SEC-C motif; COGs: COG3012 conserved hypothetical protein; InterPro IPR004027; KEGG: geo:Geob_1085 sec-C motif domain protein; PFAM: SEC-C motif; SPTR: SEC-C motif domain protein.
       0.479
AFK03402.1
PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family; COGs: COG1164 Oligoendopeptidase F; InterPro IPR011976:IPR001567; KEGG: sli:Slin_5185 oligoendopeptidase, M3 family; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 2.
       0.463
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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