STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03677.1PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: mtt:Ftrac_2199 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase. (381 aa)    
Predicted Functional Partners:
AFK03678.1
PFAM: Peptidase family M48; COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: lby:Lbys_2280 peptidase M48 ste24p; PFAM: Peptidase M48, Ste24p; SPTR: Peptidase M48 Ste24p.
       0.561
AFK03676.1
PFAM: Ribonucleotide reductase, small chain; COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: lby:Lbys_2281 ribonucleoside-diphosphate reductase; PFAM: Ribonucleotide reductase; SPTR: Ribonucleoside-diphosphate reductase.
       0.407
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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