STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03728.1PFAM: Uncharacterized protein containing a Zn-ribbon (DUF2116); KEGG: dfe:Dfer_4107 hypothetical protein; SPTR: Putative uncharacterized protein. (121 aa)    
Predicted Functional Partners:
AFK03727.1
KEGG: cpi:Cpin_2729 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.742
AFK03729.1
Transposase IS4 family protein; InterPro IPR002559; KEGG: zpr:ZPR_3005 transposase; PFAM: Transposase, IS4-like; SPTR: Transposase.
       0.528
AFK02796.1
Hypothetical protein; PFAM: SprT-like family; KEGG: lby:Lbys_2175 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.473
AFK03726.1
Heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: fjo:Fjoh_4462 CzcA family heavy metal efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA.
       0.425
AFK03655.1
KEGG: dfe:Dfer_2628 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.421
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.