STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03756.1PFAM: Fatty acid hydroxylase superfamily; COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: lby:Lbys_2748 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase. (275 aa)    
Predicted Functional Partners:
AFK03755.1
Hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain; COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR005834:IPR006543:IPR006549; KEGG: sli:Slin_5528 hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: [...]
       0.534
AFK03112.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: lby:Lbys_2905 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug.
  
     0.520
AFK02655.1
PFAM: Squalene/phytoene synthase; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: sli:Slin_5959 squalene/phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Squalene/phytoene synthase.
  
 
 0.428
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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