STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03799.1PFAM: Lyase; TIGRFAM: argininosuccinate lyase; COGs: COG0165 Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; InterPro IPR009049:IPR000362; KEGG: sli:Slin_0375 argininosuccinate lyase; PFAM: Fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: Argininosuccinate lyase. (451 aa)    
Predicted Functional Partners:
AFK02788.1
PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518; KEGG: lby:Lbys_2279 argininosuccinate synthase; PFAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase.
 
 0.998
AFK02567.1
PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase; COGs: COG0548 Acetylglutamate kinase; InterPro IPR004662:IPR001048; KEGG: dfe:Dfer_4174 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; SPTR: Acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase.
 
  
 0.981
AFK02968.1
N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form; COGs: COG0002 Acetylglutamate semialdehyde dehydrogenase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; InterPro IPR000534:IPR012280:IPR000706; KEGG: lby:Lbys_1952 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acet [...]
 
  
 0.981
AFK03436.1
PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR006132:IPR006131; KEGG: dfe:Dfer_4418 aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; SPTR: Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain.
 
  
 0.981
AFK02913.1
PFAM: Aminotransferase class-III; COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: lby:Lbys_1951 aminotransferase class-III; PFAM: Aminotransferase class-III; SPTR: Aminotransferase class-III.
 
  
 0.939
AFK04389.1
PFAM: Amidinotransferase; COGs: COG2235 Arginine deiminase; InterPro IPR003198; KEGG: sli:Slin_0192 arginine deiminase; PFAM: Amidinotransferase; SPTR: Arginine deiminase.
     
 0.918
AFK03290.1
PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: lby:Lbys_2961 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase.
    
 0.916
AFK04550.1
PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent; COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275:IPR001236; KEGG: lby:Lbys_1576 malate dehydrogenase (nad); PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase.
  
 0.846
AFK02568.1
PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: dfe:Dfer_4431 peptidase dimerisation domain protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Peptidase dimerisation domain protein.
 
  
 0.844
AFK02185.1
PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804:IPR014273; KEGG: isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; SPTR: Isocitrate dehydrogenase; TIGRFAM: Isocitrate dehydrogenase bacteria.
  
 
 0.843
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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