STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03828.1PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: sli:Slin_1673 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily MFS_1. (395 aa)    
Predicted Functional Partners:
AFK03827.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: lby:Lbys_2107 peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Peptidoglycan glycosyltransferase.
     
 0.778
AFK03826.1
PFAM: Glycosyl transferase family 2; COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: sli:Slin_2410 glycosyl transferase family 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2.
   
   0.635
AFK03829.1
PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN); COGs: COG1295 membrane protein; InterPro IPR004664:IPR017039; KEGG: lby:Lbys_0600 ribonuclease bn; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; TIGRFAM: Ribonuclease BN.
  
  
 0.624
AFK03825.1
PFAM: Methyltransferase small domain; COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: sli:Slin_2411 methyltransferase small; PFAM: Methyltransferase small; SPTR: Methyltransferase small.
       0.452
AFK03824.1
Ribonuclease H-related protein; PFAM: RNase H; Caulimovirus viroplasmin; COGs: COG3341 double-stranded RNA/RNA-DNA hybrid binding protein; KEGG: dfe:Dfer_5118 ribonuclease H-related protein; SPTR: Ribonuclease H-related protein.
 
     0.429
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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