STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03857.1KEGG: hypothetical protein; SPTR: Putative membrane protein. (420 aa)    
Predicted Functional Partners:
AFK02975.1
KEGG: cpi:Cpin_4956 MarR family transcriptional regulator; SPTR: Transcriptional regulator, MarR family.
  
     0.594
AFK01611.1
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_1518 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor.
  
     0.583
AFK01946.1
Regulatory protein MarR; InterPro IPR000835; KEGG: sli:Slin_4547 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family.
  
     0.551
AFK01948.1
COGs: COG1566 Multidrug resistance efflux pump; KEGG: secretion protein HlyD family protein; SPTR: Possible membrane protein.
  
     0.494
AFK03856.1
KEGG: putative lipoprotein; SPTR: Putative lipoprotein.
       0.475
AFK01949.1
Protein of unknown function DUF214; PFAM: Predicted permease; InterPro IPR003838; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ABC transporter, permease component.
  
     0.466
AFK01571.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: sli:Slin_2453 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein.
  
     0.464
AFK03776.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1166 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: Putative outer membrane protein, probably involved in nutrient binding.
  
     0.413
AFK03974.1
KEGG: sli:Slin_6457 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.405
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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