STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03881.1PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; InterPro IPR018060; KEGG: chu:CHU_3797 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. (254 aa)    
Predicted Functional Partners:
AFK03882.1
PFAM: Protein of unknown function (DUF1398); COGs: COG5562 Phage envelope protein; InterPro IPR009833; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF1398; SPTR: Possible bacteriophage envelope protein.
       0.582
AFK03880.1
PFAM: F5/8 type C domain; Glycosyl hydrolases family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710:IPR000421:IPR003961; KEGG: coagulation factor 5/8 type domain-containing protein; PFAM: Coagulation factor 5/8 type, C-terminal; Glycoside hydrolase, family 43; Fibronectin, type III; SPTR: Possible xylosidase/arabinosidase.
       0.520
AFK01538.1
KEGG: sli:Slin_3265 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
AFK03307.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: mtt:Ftrac_1704 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding; SPTR: Putative uncharacterized protein.
  
    0.465
AFK01541.1
PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR002818:IPR000005; KEGG: chu:CHU_3787 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.454
AFK01852.1
KEGG: bge:BC1002_4930 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.425
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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