STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK03955.1PFAM: Hydrogenase expression/synthesis hypA family; COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: sli:Slin_3882 hydrogenase expression/synthesis HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; SPTR: Hydrogenase expression/synthesis HypA. (113 aa)    
Predicted Functional Partners:
AFK03950.1
PFAM: Nickel-dependent hydrogenase; COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR001501; KEGG: sli:Slin_3886 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; SPTR: Nickel-dependent hydrogenase large subunit.
 
 
 0.981
AFK03956.1
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392:IPR003495; KEGG: sli:Slin_3881 hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB.
 
 0.980
AFK03951.1
PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: sli:Slin_3885 hydrogenase maturation protease; PFAM: Peptidase A31, hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein.
 
  
 0.913
AFK03954.1
KEGG: sli:Slin_3883 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.892
AFK03949.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA); COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR006137; KEGG: sli:Slin_3887 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
  
 0.872
AFK03961.1
InterPro IPR001258; KEGG: sli:Slin_3876 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein.
 
     0.820
AFK03962.1
KEGG: sli:Slin_3875 urease accessory protein; SPTR: Putative urease accessory protein.
 
   
 0.791
AFK03957.1
(NiFe) hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; COGs: COG0068 Hydrogenase maturation factor; InterProIPR004421:IPR001792:IPR011125:IPR006070:IPR 002731; KEGG: acylphosphatase; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; ATPase, BadF/BadG/BcrA/BcrD type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type.
     
 0.745
AFK03958.1
PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF; COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: sli:Slin_3879 hydrogenase assembly chaperone HypC/HupF; PFAM: Hydrogenase expression/formation protein, HupF/HypC; SPTR: Hydrogenase assembly chaperone hypC/hupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC.
 
  
 0.714
AFK04641.1
PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; ATPase MipZ; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: dfe:Dfer_4935 protein of unknown function DUF59; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: Putative uncharacterized protein.
   
   0.676
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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