STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04101.1PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase; COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: sli:Slin_2020 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Mandelate racemase/muconate lactonizing protein. (363 aa)    
Predicted Functional Partners:
AFK05130.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873; KEGG: lby:Lbys_1329 amp-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: O-succinylbenzoic acid--CoA ligase.
    0.978
AFK05314.1
PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR004433:IPR012001; KEGG: sli:Slin_1992 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone [...]
 
   
 0.803
AFK03492.1
PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases; COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: sli:Slin_0770 chorismate binding-like protein; PFAM: Chorismate binding, C-terminal; SPTR: Chorismate binding-like protein.
 
   
 0.796
AFK04636.1
1,4-dihydroxy-2-naphthoateoctaprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537:IPR004657; KEGG: dfe:Dfer_2681 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.745
AFK02663.1
Naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase); COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR010198:IPR001753; KEGG: lby:Lbys_2851 1,4-dihydroxy-2-naphthoate synthase; PFAM: Crotonase, core; SPTR: 1,4-Dihydroxy-2-naphthoate synthase; TIGRFAM: Naphthoate synthase.
 
   
 0.716
AFK04997.1
PFAM: Domain of Unknown Function (DUF1599); InterPro IPR011630; KEGG: sli:Slin_2316 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: Putative uncharacterized protein.
  
     0.626
AFK04102.1
PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: dfe:Dfer_2371 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase.
       0.579
AFK03322.1
Hypothetical protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family; COGs: COG2971 N-acetylglucosamine kinase; KEGG: lby:Lbys_3353 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.534
AFK04103.1
Hypothetical protein; PFAM: Caspase domain; KEGG: plm:Plim_2823 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.534
AFK03427.1
Protein of unknown function DUF177; PFAM: Uncharacterized ACR, COG1399; COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: lby:Lbys_1683 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR: Putative uncharacterized protein.
  
     0.531
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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