STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04292.1Hypothetical protein; PFAM: Beta-propeller repeat; KEGG: dfe:Dfer_2225 hypothetical protein; SPTR: Putative uncharacterized protein. (514 aa)    
Predicted Functional Partners:
AFK01689.1
InterPro IPR000601; KEGG: dfe:Dfer_2684 PKD domain containing protein; SMART: PKD; SPTR: PKD domain containing protein.
  
     0.577
AFK02251.1
PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase; COGs: COG5434 Endopygalactorunase; InterPro IPR006626:IPR001087:IPR000743; KEGG: polygalacturonase; PFAM: Glycoside hydrolase, family 28; Lipase, GDSL; SPTR: Glycoside hydrolase family 28.
  
 
 0.489
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.