STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04297.1KEGG: sli:Slin_4519 hypothetical protein; SPTR: Putative uncharacterized protein. (212 aa)    
Predicted Functional Partners:
AFK04298.1
PFAM: Citrate transporter; TIGRFAM: citrate transporter, CitMHS family; COGs: COG2851 H+/citrate symporter; InterPro IPR004680:IPR014738; KEGG: citrate/H+ symporter, CitMHS family; PFAM: Divalent ion symporter; SPTR: Citrate/H+ symporter, CitMHS family; TIGRFAM: Citrate transporter; manually curated.
       0.686
AFK04296.1
PFAM: Protein of unknown function (DUF1446); InterPro IPR010839; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF1446; SPTR: Putative uncharacterized protein.
       0.580
AFK04295.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
       0.577
AFK04299.1
PFAM: Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917; KEGG: rbi:RB2501_09500 putative sulfatase; PFAM: Sulfatase; SPTR: Mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase).
       0.531
AFK04294.1
PFAM: Carboxylesterase; COGs: COG2272 Carboxylesterase type B; InterPro IPR002018; KEGG: carboxylesterase type B; PFAM: Carboxylesterase, type B; SPTR: Carboxylesterase.
       0.529
AFK04293.1
PFAM: D-arabinono-1,4-lactone oxidase; FAD binding domain; COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR007173; KEGG: sli:Slin_6373 FAD linked oxidase; PFAM: FAD linked oxidase, N-terminal; D-arabinono-1,4-lactone oxidase; SPTR: FAD linked oxidase domain protein.
       0.408
AFK04300.1
Esterase; PFAM: Putative esterase; COGs: COG0627 esterase; InterPro IPR000801; KEGG: sli:Slin_1255 esterase; PFAM: Putative esterase; SPTR: Putative esterase.
       0.407
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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