STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04345.1PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial; COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR000109:IPR005279; KEGG: lby:Lbys_3461 amino acid/peptide transporter; PFAM: Oligopeptide transporter; SPTR: Amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter. (482 aa)    
Predicted Functional Partners:
AFK04344.1
PFAM: PASTA domain; COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: lby:Lbys_1412 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA; SPTR: PASTA domain containing protein.
       0.520
AFK04343.1
KEGG: dfe:Dfer_2924 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.498
AFK02646.1
PFAM: Peptidase family M13; COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: sli:Slin_1278 neprilysin; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; SPTR: Neprilysin.
 
  
 0.444
AFK04346.1
PFAM: Fatty acid desaturase; COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: sli:Slin_3564 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty acid desaturase.
  
    0.440
AFK04342.1
PFAM: Rhodanese-like domain; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: lby:Lbys_1413 rhodanese domain protein; SMART: Rhodanese-like; SPTR: Rhodanese domain protein.
       0.431
AFK02633.1
PFAM: PA domain; Peptidase family M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28.
 
   0.411
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.