STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04351.1TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260; KEGG: lby:Lbys_3214 outer membrane transport energization protein TonB; SPTR: Outer membrane transport energization protein TonB; TIGRFAM: TonB, C-terminal. (132 aa)    
Predicted Functional Partners:
AFK04194.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: sli:Slin_4238 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug.
 
 
 0.779
AFK02332.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR011659:IPR006665; KEGG: lby:Lbys_1529 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein.
 
 
 
 0.777
AFK04253.1
KEGG: lby:Lbys_3231 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   0.679
AFK04412.1
TonB-dependent receptor plug; InterPro IPR012910; KEGG: sli:Slin_2376 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug.
  
   0.653
AFK04981.1
PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX); KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.648
AFK03945.1
PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR013221:IPR001608:IPR011079; KEGG: dfe:Dfer_4988 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Alanine racemase, C-terminal; SPTR: Alanine racemase; TIGRFAM: Alanine racemase.
 
    0.645
AFK04352.1
TonB family protein; PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB family C-terminal domain; InterPro IPR008756:IPR003538:IPR012910:IPR006260; KEGG: phe:Phep_0213 TonB family protein; PFAM: Gram-negative bacterial tonB protein; Peptidase M56, BlaR1; TonB-dependent receptor, plug; SPTR: TonB; TIGRFAM: TonB, C-terminal.
 
    
0.615
AFK04495.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein.
  
   0.606
AFK04350.1
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: phe:Phep_0214 penicillinase repressor; PFAM: Penicillinase repressor; SPTR: Penicillinase repressor.
 
     0.596
AFK01584.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR001440:IPR011659:IPR006665; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Tetratricopeptide TPR-1; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein.
 
 
 
 0.589
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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