STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04469.1SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: fbc:FB2170_00750 putative gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Possible gluconolactonase. (289 aa)    
Predicted Functional Partners:
AFK05011.1
PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; COGs: COG4993 Glucose dehydrogenase; InterPro IPR019551:IPR002372:IPR003088:IPR018391; KEGG: Quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; Cytochrome c, class I; SPTR: Pyrrolo-quinoline quinone.
  
  
 0.928
AFK03179.1
SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_2426 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Gluconolactonase.
  
  
 
0.923
AFK03659.1
PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; PQQ enzyme repeat; COGs: COG4993 Glucose dehydrogenase; InterPro IPR018391:IPR019551:IPR002372:IPR019556; KEGG: sli:Slin_1132 PQQ-dependent enzyme-like protein; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; SPTR: PQQ-dependent enzyme-like protein.
  
  
 0.921
AFK02385.1
Heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative membrane-bound dehydrogenase domain; putative heme-binding domain, Pirellula/Verrucomicrobium type; COGs: COG2133 Glucose/sorbosone dehydrogenase; InterPro IPR013427:IPR004155; KEGG: heme-binding protein; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region.
 
  
  0.914
AFK01875.1
PFAM: Aldo/keto reductase family; COGs: COG0656 Aldo/keto reductase related to diketogulonate reductase; InterPro IPR001395; KEGG: syn:slr0942 aldehyde reductase; PFAM: Aldo/keto reductase; SPTR: Aldehyde reductase.
  
 
  0.906
AFK03030.1
PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: gluconate kinase, FGGY type; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: gluconokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; SPTR: Gluconokinase.
  
 
 0.906
AFK03294.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: ttr:Tter_0157 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR.
  
 
 0.902
AFK03026.1
KEGG: sli:Slin_2016 hypothetical protein; SPTR: Putative uncharacterized protein.
     
  0.900
AFK04635.1
PFAM: Glutathione peroxidase; COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: sli:Slin_0040 peroxiredoxin; PFAM: Glutathione peroxidase; SPTR: Glutathione peroxidase.
 
    0.852
AFK04468.1
PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR006311; KEGG: dfe:Dfer_0291 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Probable IolI protein.
 
     0.696
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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