STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04536.1Transposase; PFAM: Putative transposase; InterPro IPR007069; KEGG: tjr:TherJR_1461 putative transposase; PFAM: Transposase, IS801/IS1294; SPTR: Putative transposase. (387 aa)    
Predicted Functional Partners:
AFK04535.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: shg:Sph21_0303 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase/recombinase.
     0.935
AFK04518.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: shg:Sph21_0303 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase/recombinase.
     0.725
AFK04525.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: shg:Sph21_0303 integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Integrase/recombinase.
     0.725
AFK04736.1
COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: lby:Lbys_3216 phosphate ABC transporter, phosphate-binding component; SPTR: Putative phosphate ABC transporter, phosphate-binding component.
  
 
 0.718
AFK01753.1
Periplasmic binding protein/LacI transcriptional regulator; PFAM: family; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: phe:Phep_2801 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SPTR: Periplasmic binding protein/LacI transcriptional regulator.
   
 
 0.706
AFK05081.1
PFAM: ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525; KEGG: lby:Lbys_0053 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter.
     
 0.698
AFK02218.1
PFAM: ABC transporter; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439:IPR013611; KEGG: sli:Slin_0799 ABC transporter; PFAM: ABC transporter-like; Transport-associated OB, type 2; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein.
     
 0.694
AFK01755.1
PFAM: ABC transporter; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2122 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
   
 
 0.683
AFK02082.1
PFAM: ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: lby:Lbys_2497 ABC transporter related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related protein.
     
 0.683
AFK02669.1
KEGG: lby:Lbys_2389 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.674
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.