STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04546.1Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; LysM domain; COGs: COG1388 FOG: LysM repeat; InterPro IPR008258:IPR018392:IPR002482; KEGG: lby:Lbys_1580 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Lytic transglycosylase catalytic. (516 aa)    
Predicted Functional Partners:
AFK02332.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR011659:IPR006665; KEGG: lby:Lbys_1529 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein.
 
 
 
 0.725
AFK04017.1
Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR017790:IPR005311:IPR001460; KEGG: lby:Lbys_1222 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; SPTR: Peptidoglycan glycosyltransferase; TIGRFAM: Penicillin-binding protein 2.
 
 
 0.675
AFK02089.1
Cell wall hydrolase/autolysin; PFAM: N-acetylmuramoyl-L-alanine amidase; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: lby:Lbys_2148 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall hydrolase/autolysin.
 
  
 0.665
AFK04895.1
Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: lby:Lbys_0468 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative uncharacterized protein; manually curated.
 
     0.661
AFK02977.1
PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: sli:Slin_4755 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein FtsA; TIGRFAM: Cell division protein family FtsA.
 
  
 0.658
AFK04876.1
PFAM: Peptidase S26; Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; COGs: COG0681 Signal peptidase I; InterPro IPR000223:IPR019759; KEGG: lby:Lbys_0622 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I.
 
  
 0.613
AFK01912.1
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: sli:Slin_2738 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein.
 
 
 
 0.610
AFK03945.1
PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase; COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterPro IPR000821:IPR013221:IPR001608:IPR011079; KEGG: dfe:Dfer_4988 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Alanine racemase, C-terminal; SPTR: Alanine racemase; TIGRFAM: Alanine racemase.
     
 0.598
AFK04356.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: lby:Lbys_3465 glycosyl transferase family 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Glycosyl transferase family 51.
 
  
 0.581
AFK04547.1
PFAM: Amidase; TIGRFAM: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412:IPR000120; KEGG: dfe:Dfer_4462 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit.
     
 0.571
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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