STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04572.1PFAM: NADP oxidoreductase coenzyme F420-dependent; COGs: COG2085 dinucleotide-binding protein; InterPro IPR004455; KEGG: NADP oxidoreductase coenzyme F420-dependent; PFAM: NADP oxidoreductase, coenzyme F420-dependent; SPTR: NADP oxidoreductase coenzyme f420-dependent superfamily. (206 aa)    
Predicted Functional Partners:
AFK04571.1
Hypothetical protein; PFAM: Bestrophin; COGs: COG3781 membrane protein; InterPro IPR007913; KEGG: chu:CHU_1817 hypothetical protein; SPTR: Conserved effector locus protein.
 
     0.694
AFK04570.1
KEGG: cpi:Cpin_2508 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.645
AFK04568.1
ThiJ/PfpI domain-containing protein; PFAM: DJ-1/PfpI family; COGs: COG0693 Putative intracellular protease/amidase; InterPro IPR002818; KEGG: ThiJ/PfpI domain-containing protein; PFAM: ThiJ/PfpI; SPTR: ThiJ/PfpI family protein.
 
     0.484
AFK03191.1
PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: sli:Slin_4917 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein.
  
 
  0.404
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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