STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04607.1PFAM: Protein of unknown function (DUF2851); KEGG: aas:Aasi_0589 hypothetical protein; SPTR: Putative uncharacterized protein. (426 aa)    
Predicted Functional Partners:
AFK01880.1
DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; InterPro IPR003716; KEGG: lby:Lbys_0699 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
  
     0.651
AFK04408.1
COGs: COG1555 DNA uptake protein and related DNA-binding protein; KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein; SPTR: DNA uptake protein and related DNA-binding protein-like protein.
 
     0.632
AFK04608.1
PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: dfe:Dfer_2966 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core.
       0.614
AFK03914.1
PFAM: Protein of unknown function (DUF2723); KEGG: lby:Lbys_0232 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.582
AFK03809.1
PFAM: Bacterial membrane protein YfhO; KEGG: lby:Lbys_0046 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.561
AFK03035.1
Transcriptional regulator, TraR/DksA family; PFAM: Prokaryotic dksA/traR C4-type zinc finger; COGs: COG1734 DnaK suppressor protein; KEGG: lby:Lbys_2769 transcriptional regulator, TraR/DksA family; SPTR: Transcriptional regulator, TraR/DksA family.
  
     0.491
AFK02978.1
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.482
AFK03274.1
TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020019:IPR001451; KEGG: sli:Slin_5687 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: Sialic acid O-acyltransferase, NeuD.
 
      0.481
AFK04448.1
InterPro IPR007409; KEGG: dfe:Dfer_2421 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Putative uncharacterized protein.
 
     0.480
AFK04997.1
PFAM: Domain of Unknown Function (DUF1599); InterPro IPR011630; KEGG: sli:Slin_2316 hypothetical protein; PFAM: Protein of unknown function DUF1599; SPTR: Putative uncharacterized protein.
  
     0.474
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.