STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04723.1TonB-dependent receptor; InterPro IPR000531; KEGG: dfe:Dfer_5762 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR: Putative uncharacterized protein. (951 aa)    
Predicted Functional Partners:
AFK03052.1
Sporulation domain-containing protein; PFAM: Sporulation related domain; InterPro IPR007730; KEGG: dfe:Dfer_3955 sporulation domain protein; PFAM: Sporulation/cell division region, bacteria; SPTR: Sporulation domain protein.
  
     0.520
AFK01843.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.498
AFK02267.1
KEGG: psn:Pedsa_1829 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.483
AFK04722.1
PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Putative uncharacterized protein.
       0.472
AFK04724.1
PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: fjo:Fjoh_4213 carbohydrate kinase, FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; SPTR: Carbohydrate kinase, FGGY.
       0.469
AFK04351.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260; KEGG: lby:Lbys_3214 outer membrane transport energization protein TonB; SPTR: Outer membrane transport energization protein TonB; TIGRFAM: TonB, C-terminal.
  
   0.460
AFK02064.1
KEGG: lby:Lbys_2860 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.453
AFK02265.1
ABC-2 type transporter; PFAM: CcmB protein; COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR013525; KEGG: sli:Slin_1448 cytochrome c biogenesis protein CcmB; PFAM: ABC-2 type transporter; SPTR: Cytochrome c-type biogenesis protein CcmB.
  
     0.431
AFK04538.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260; KEGG: pru:PRU_1918 TonB family protein; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal.
  
   0.407
AFK04656.1
PFAM: Protein of unknown function (DUF3109); KEGG: lby:Lbys_1588 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.404
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.