STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK04870.1KEGG: sli:Slin_6865 hypothetical protein; SPTR: Putative uncharacterized protein. (242 aa)    
Predicted Functional Partners:
AFK04869.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG3391 conserved hypothetical protein; InterPro IPR011964; KEGG: sli:Slin_6812 40-residue YVTN family beta-propeller repeat protein; SPTR: 40-residue YVTN family beta-propeller repeat protein; TIGRFAM: YVTN beta-propeller repeat.
       0.744
AFK04868.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; InterPro IPR000531; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor.
       0.741
AFK04867.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat; COGs: COG3391 conserved hypothetical protein; InterPro IPR011964; KEGG: sli:Slin_6860 40-residue YVTN family beta-propeller repeat protein; SPTR: 40-residue YVTN family beta-propeller repeat protein; TIGRFAM: YVTN beta-propeller repeat.
       0.536
AFK05007.1
PFAM: Amidohydrolase family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1771 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.
  
     0.505
AFK04866.1
PFAM: Heavy-metal-associated domain; InterPro IPR006121; KEGG: dfe:Dfer_3112 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein.
       0.482
AFK05003.1
PFAM: Amidohydrolase family; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: sli:Slin_1772 amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.
  
     0.463
AFK04871.1
KEGG: sli:Slin_1510 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.411
AFK03726.1
Heavy metal efflux pump, CzcA family; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); COGs: COG3696 Putative silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: fjo:Fjoh_4462 CzcA family heavy metal efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA.
     0.405
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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