STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05025.1KEGG: dfe:Dfer_1335 hypothetical protein; SPTR: Putative uncharacterized protein. (454 aa)    
Predicted Functional Partners:
AFK01587.1
PFAM: Protein of unknown function, DUF255; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: Putative uncharacterized protein.
   
 
 0.876
AFK03494.1
Thioredoxin; PFAM: Protein of unknown function, DUF255; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR004879; KEGG: sli:Slin_4487 thioredoxin; SPTR: Thioredoxin-related protein-like protein.
   
 
 0.876
AFK02285.1
PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104:IPR006102:IPR006103; KEGG: glycoside hydrolase; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase family 2, TIM barrel; SPTR: Glycoside hydrolase family 2 sugar binding protein.
 
 
 0.857
AFK05024.1
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: dfe:Dfer_0419 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
       0.686
AFK03085.1
KEGG: dfe:Dfer_3756 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 0.638
AFK04469.1
SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: fbc:FB2170_00750 putative gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Possible gluconolactonase.
 
  
  0.619
AFK02435.1
Membrane-bound dehydrogenase domain protein; PFAM: Copper binding proteins, plastocyanin/azurin family; Trehalose utilisation; CARDB; TIGRFAM: putative membrane-bound dehydrogenase domain; COGs: COG3828 conserved hypothetical protein; InterPro IPR013428:IPR009381:IPR011635:IPR000923; KEGG: sli:Slin_0511 dehydrogenase; PFAM: Blue (type 1) copper domain; APHP; Protein of unknown function DUF1037; SPTR: Membrane-bound dehydrogenase domain protein; TIGRFAM: Putative membrane-bound dehydrogenase.
 
     0.603
AFK02961.1
PFAM: Protein of unknown function, DUF547; InterPro IPR006869; KEGG: cao:Celal_0940 hypothetical protein; PFAM: Protein of unknown function DUF547; SPTR: Putative uncharacterized protein.
   
 
 0.554
AFK03179.1
SMP-30/Gluconolaconase/LRE-like region-containing protein; PFAM: SMP-30/Gluconolaconase/LRE-like region; COGs: COG3386 Gluconolactonase; InterPro IPR013658; KEGG: dfe:Dfer_2426 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; SPTR: Gluconolactonase.
 
  
  0.529
AFK05023.1
4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: sli:Slin_0323 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA.
       0.493
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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