STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05040.1KEGG: sli:Slin_6621 hypothetical protein; SPTR: Putative uncharacterized protein. (2405 aa)    
Predicted Functional Partners:
AFK02794.1
KEGG: dfe:Dfer_4247 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.967
AFK04842.1
KEGG: dfe:Dfer_4777 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
   0.961
AFK02656.1
PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit; COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dfe:Dfer_3720 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta chain.
   
 0.943
AFK02903.1
3'-5' exonuclease, PolB-like protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro IPR019288; KEGG: dfe:Dfer_3714 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Putative uncharacterized protein.
  
 0.940
AFK05431.1
Peptidase S24/S26A/S26B, conserved region; PFAM: Peptidase S24-like; COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR019759; KEGG: dba:Dbac_0176 peptidase S24 and S26 domain protein; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR: Peptidase S24 and S26 domain protein.
  
 0.835
AFK01693.1
Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR019734:IPR013105:IPR001440; KEGG: sli:Slin_3219 hypothetical protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
 
 0.807
AFK03647.1
KEGG: lby:Lbys_2722 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.806
AFK01861.1
KEGG: dfe:Dfer_2973 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.780
AFK01876.1
KEGG: lby:Lbys_3396 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.771
AFK03322.1
Hypothetical protein; PFAM: BadF/BadG/BcrA/BcrD ATPase family; COGs: COG2971 N-acetylglucosamine kinase; KEGG: lby:Lbys_3353 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.766
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.