STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05156.1KEGG: hypothetical protein; SPTR: Putative uncharacterized protein. (735 aa)    
Predicted Functional Partners:
AFK05157.1
Neuraminidase (sialidase)-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein.
 
     0.941
AFK05155.1
PFAM: Protein of unknown function (DUF3748); KEGG: dfe:Dfer_4309 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.905
AFK05158.1
PFAM: PhoPQ-activated pathogenicity-related protein; COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: PhoPQ-activated pathogenicity-like protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; SPTR: PhoPQ-activated pathogenicity-related protein PqaA type.
 
     0.898
AFK05154.1
PFAM: Dihydrodipicolinate synthetase family; COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: dfe:Dfer_3986 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthetase.
 
     0.832
AFK02398.1
Heme-binding protein; PFAM: Cytochrome c; TIGRFAM: putative heme-binding domain, Pirellula/Verrucomicrobium type; InterPro IPR013427; KEGG: heme-binding protein; SPTR: Heme-binding protein; TIGRFAM: Putative haem-binding region.
  
     0.735
AFK02423.1
Hypothetical protein; PFAM: Trehalose utilisation; KEGG: hypothetical protein; SPTR: Signal peptide and transmembrane prediction.
  
     0.722
AFK03146.1
PFAM: Acetyl xylan esterase (AXE1); COGs: COG3458 Acetyl esterase (deacetylase); InterPro IPR008391; KEGG: Cephalosporin-C deacetylase; PFAM: Acetyl xylan esterase; SPTR: Acetyl xylan esterase.
  
     0.665
AFK01569.1
PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: pdi:BDI_3797 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Putative uncharacterized protein.
  
     0.636
AFK05153.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG0591 Na+/proline symporter; InterPro IPR019900:IPR001734; KEGG: bth:BT_2813 sodium-dependent multivitamin transporter; PFAM: Sodium/solute symporter; SPTR: Sodium-dependent multivitamin transporter; TIGRFAM: Sodium/solute symporter, subgroup.
 
     0.621
AFK05279.1
PFAM: YdjC-like protein; COGs: COG3394 conserved hypothetical protein; InterPro IPR006879; KEGG: dfe:Dfer_3997 YdjC family protein; PFAM: YdjC-like protein; SPTR: YdjC family protein.
 
     0.566
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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