STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05181.1PFAM: Nuclease A inhibitor-like protein; InterPro IPR012489; KEGG: sli:Slin_2215 nuclease A inhibitor; PFAM: Nuclease A inhibitor-like; SPTR: Nuclease A inhibitor family protein. (141 aa)    
Predicted Functional Partners:
AFK04131.1
PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA phosphorothioation system restriction enzyme; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: pru:PRU_1053 type III restriction-modification system subunit Res; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DNA repair helicase.
  
 
  0.571
AFK05180.1
KEGG: sli:Slin_2214 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.546
AFK02578.1
DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form; COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta'; InterProIPR012754:IPR006592:IPR007080:IPR000722:IPR 007066:IPR007083:IPR007081; KEGG: lby:Lbys_2621 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, [...]
   
 0.516
AFK01880.1
DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; InterPro IPR003716; KEGG: lby:Lbys_0699 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
   
 
  0.499
AFK02577.1
DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase subunit beta; InterProIPR010243:IPR007644:IPR007642:IPR007645:IPR 019462:IPR007120:IPR007641; KEGG: lby:Lbys_2620 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymer [...]
    
  0.481
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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