STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05260.1WxcM-like domain-containing protein; PFAM: WxcM-like, C-terminal; InterPro IPR008894; KEGG: sli:Slin_0289 WxcM domain protein; PFAM: WxcM-like, C-terminal; SPTR: WxcM domain protein. (138 aa)    
Predicted Functional Partners:
AFK05353.1
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: sli:Slin_0290 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase.
  
 
   0.744
AFK05261.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_6198 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR.
       0.491
AFK05262.1
PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus; COGs: COG3661 Alpha-glucuronidase; InterPro IPR005154:IPR011100:IPR011099; KEGG: alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle; Glycoside hydrolase family 67; Glycosyl hydrolase 67, C-terminal; SPTR: Alpha-glucuronidase.
       0.465
AFK05263.1
PFAM: Domain of unknown function (DUF303); Glycosyl hydrolases family 2, sugar binding domain; InterPro IPR005181:IPR006104; KEGG: zpr:ZPR_3029 acetylesterase; PFAM: Protein of unknown function DUF303, acetylesterase putative; Glycoside hydrolase family 2, carbohydrate-binding; SPTR: Putative uncharacterized protein.
       0.465
AFK05264.1
PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase; COGs: COG1312 D-mannonate dehydratase; HAMAP: Mannonate dehydratase; InterPro IPR004628; KEGG: sli:Slin_6196 mannonate dehydratase; PFAM: Mannonate dehydratase; SPTR: Mannonate dehydratase 2; TIGRFAM: Mannonate dehydratase.
       0.465
AFK02947.1
KEGG: dfe:Dfer_3839 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.422
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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