STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05324.1PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR006424:IPR020828:IPR020829; KEGG: cpi:Cpin_1397 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glycer [...] (337 aa)    
Predicted Functional Partners:
AFK02604.1
PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: lby:Lbys_2063 triosephosphate isomerase; PFAM: Triosephosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase.
 0.999
AFK04280.1
PFAM: Phosphoglycerate kinase; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: dfe:Dfer_2700 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase.
 0.998
AFK03900.1
PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR006411:IPR000771; KEGG: lby:Lbys_3010 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; SPTR: Fructose-bisphosphate aldolase; TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II.
  
 0.987
AFK04631.1
PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase; COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941:IPR020811:IPR020810; KEGG: lby:Lbys_0613 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; SPTR: Enolase; TIGRFAM: Enolase.
 
 
 0.981
AFK05048.1
PFAM: Phosphoglucose isomerase; COGs: COG0166 Glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); InterPro IPR001672; KEGG: dfe:Dfer_1231 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase.
  
 
 0.961
AFK02906.1
PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: lby:Lbys_2607 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase.
   
 
 0.910
AFK02894.1
PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; KEGG: lby:Lbys_2028 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase.
 
 
 0.894
AFK01716.1
PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family; COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR004731:IPR001585; KEGG: shg:Sph21_3182 transaldolase; PFAM: Transaldolase; SPTR: Probable transaldolase; TIGRFAM: Transaldolase C.
  
 
 0.892
AFK03286.1
PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: uridine kinase; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: lby:Lbys_3067 phosphoribulokinase/uridine kinase; PFAM: Phosphoribulokinase/uridine kinase; SPTR: Phosphoribulokinase/uridine kinase.
   
 
 0.871
AFK05113.1
Hypothetical protein; PFAM: Phosphoribulokinase / Uridine kinase family; COGs: COG0572 Uridine kinase; KEGG: lby:Lbys_3327 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.871
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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