STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05396.1PFAM: Predicted periplasmic protein (DUF2233); COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; KEGG: hypothetical protein; SPTR: Putative uncharacterized protein. (290 aa)    
Predicted Functional Partners:
AFK05395.1
PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: dfe:Dfer_3733 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D; SPTR: NADH dehydrogenase (Quinone).
       0.661
AFK05397.1
PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg); COGs: COG2094 3-methyladenine DNA glycosylase; HAMAP: 3-methyladenine DNA glycosylase; InterPro IPR003180; KEGG: sli:Slin_0319 DNA-3-methyladenine glycosylase; PFAM: Methylpurine-DNA glycosylase (MPG); SPTR: Putative 3-methyladenine DNA glycosylase; TIGRFAM: Methylpurine-DNA glycosylase (MPG).
       0.565
AFK05157.1
Neuraminidase (sialidase)-like protein; COGs: COG4692 neuraminidase (sialidase); KEGG: neuraminidase (sialidase)-like protein; SPTR: Neuraminidase (Sialidase)-like protein.
  
     0.448
AFK03028.1
PFAM: Beta-lactamase; Domain of unknown function (DUF3471); COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: sli:Slin_2987 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase.
  
     0.444
AFK04282.1
KEGG: hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.432
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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