STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK05438.1KEGG: sli:Slin_5940 hypothetical protein; SPTR: Putative uncharacterized protein. (290 aa)    
Predicted Functional Partners:
AFK05437.1
KEGG: coc:Coch_1401 membrane protein; SPTR: Membrane protein.
       0.664
AFK05436.1
KEGG: dfe:Dfer_5026 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.655
AFK05439.1
PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase; COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: sli:Slin_1926 glycerate kinase; PFAM: Glycerate kinase; SPTR: Glycerate kinase; TIGRFAM: Glycerate kinase.
  
    0.630
AFK05440.1
PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase, heterodimeric type, beta chain; COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: sli:Slin_6641 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; SPTR: Methylmalonyl-CoA mutase; IMG reference gene:2506485788_SP.
       0.619
AFK05435.1
PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: sli:Slin_3216 ATP synthase F0 subunit alpha; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A.
       0.553
AFK04628.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_2542 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein.
  
    0.422
AFK05434.1
PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c; HAMAP: ATPase, F0 complex, subunit C; InterPro IPR000454:IPR002379:IPR005953; KEGG: lby:Lbys_3611 ATP synthase f0 subcomplex C subunit; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast.
       0.414
AFK01897.1
Ion transport 2 domain protein; PFAM: Inward rectifier potassium channel; InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: K channel inward rectifier conserved region 2 domain protein.
  
     0.402
Your Current Organism:
Emticicia oligotrophica
NCBI taxonomy Id: 929562
Other names: E. oligotrophica DSM 17448, Emticicia oligotrophica DSM 17448, Emticicia oligotrophica GPTSA100-15, Emticicia oligotrophica str. DSM 17448, Emticicia oligotrophica strain DSM 17448
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