STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_1Cyclic di-GMP phosphodiesterase Gmr. (454 aa)    
Predicted Functional Partners:
pdeB
Cyclic di-GMP phosphodiesterase PdeB.
 
 0.990
A6M23_09225
3'3'-cGAMP-specific phosphodiesterase 3.
  
 0.919
yjcC
Putative cyclic-di-GMP phosphodiesterase YjcC.
 
 
 0.872
yfgF_2
Cyclic di-GMP phosphodiesterase YfgF.
 
 
 0.870
yfgF_1
Cyclic di-GMP phosphodiesterase YfgF.
 
  
 0.809
yegE
Putative diguanylate cyclase YegE.
 
 
0.803
dosC_2
Diguanylate cyclase DosC.
 
 
0.799
yedQ
Putative diguanylate cyclase YedQ.
 
0.779
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 
0.751
A6M23_11690
Putative signaling protein.
 
 
0.733
Your Current Organism:
Acidithiobacillus thiooxidans
NCBI taxonomy Id: 930
Other names: A. thiooxidans, ATCC 19377, CIP 104597, DSM 14887, JCM 3867, NCIMB 8343, Thiobacillus concretivorus, Thiobacillus crenatus, Thiobacillus lobatus, Thiobacillus thermitanus, Thiobacillus thiooxidans, Thiobacillus umbonatus, Thiobacterium thiooxydans
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