Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| A6P07_01100 | mrdA_1 | GCA_002079865_01276 | GCA_002079865_01277 | Hypothetical protein. | Peptidoglycan D,D-transpeptidase MrdA. | 0.575 |
| A6P07_01100 | pth | GCA_002079865_01276 | GCA_002079865_01279 | Hypothetical protein. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.555 |
| A6P07_01100 | rplY | GCA_002079865_01276 | GCA_002079865_01278 | Hypothetical protein. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.557 |
| A6P07_01100 | ychF | GCA_002079865_01276 | GCA_002079865_01280 | Hypothetical protein. | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.549 |
| mrdA_1 | A6P07_01100 | GCA_002079865_01277 | GCA_002079865_01276 | Peptidoglycan D,D-transpeptidase MrdA. | Hypothetical protein. | 0.575 |
| mrdA_1 | pth | GCA_002079865_01277 | GCA_002079865_01279 | Peptidoglycan D,D-transpeptidase MrdA. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.789 |
| mrdA_1 | rplY | GCA_002079865_01277 | GCA_002079865_01278 | Peptidoglycan D,D-transpeptidase MrdA. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.803 |
| mrdA_1 | ychF | GCA_002079865_01277 | GCA_002079865_01280 | Peptidoglycan D,D-transpeptidase MrdA. | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.780 |
| pth | A6P07_01100 | GCA_002079865_01279 | GCA_002079865_01276 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Hypothetical protein. | 0.555 |
| pth | mrdA_1 | GCA_002079865_01279 | GCA_002079865_01277 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Peptidoglycan D,D-transpeptidase MrdA. | 0.789 |
| pth | rplY | GCA_002079865_01279 | GCA_002079865_01278 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.928 |
| pth | ychF | GCA_002079865_01279 | GCA_002079865_01280 | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.983 |
| rplY | A6P07_01100 | GCA_002079865_01278 | GCA_002079865_01276 | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Hypothetical protein. | 0.557 |
| rplY | mrdA_1 | GCA_002079865_01278 | GCA_002079865_01277 | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Peptidoglycan D,D-transpeptidase MrdA. | 0.803 |
| rplY | pth | GCA_002079865_01278 | GCA_002079865_01279 | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.928 |
| rplY | ychF | GCA_002079865_01278 | GCA_002079865_01280 | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.854 |
| ychF | A6P07_01100 | GCA_002079865_01280 | GCA_002079865_01276 | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | Hypothetical protein. | 0.549 |
| ychF | mrdA_1 | GCA_002079865_01280 | GCA_002079865_01277 | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | Peptidoglycan D,D-transpeptidase MrdA. | 0.780 |
| ychF | pth | GCA_002079865_01280 | GCA_002079865_01279 | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.983 |
| ychF | rplY | GCA_002079865_01280 | GCA_002079865_01278 | Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.854 |