STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrAMultidrug export protein EmrA. (344 aa)    
Predicted Functional Partners:
ybhR
Inner membrane transport permease YbhR.
  
 0.982
ybhS
Inner membrane transport permease YbhS.
  
 0.982
ybhF
Putative ABC transporter ATP-binding protein YbhF.
  
 0.970
A6P07_14770
Hypothetical protein.
  
  
 0.679
apxIB
Toxin RTX-I translocation ATP-binding protein.
  
 
 0.651
oprM_2
Outer membrane protein OprM.
 
 
 0.626
oprM_4
Outer membrane protein OprM.
 
 
 0.615
oprM_5
Outer membrane protein OprM.
 
 
 0.609
oprM_3
Outer membrane protein OprM.
 
 
 0.604
oprM_1
Outer membrane protein OprM.
 
 
 0.585
Your Current Organism:
Acidithiobacillus thiooxidans
NCBI taxonomy Id: 930
Other names: A. thiooxidans, ATCC 19377, CIP 104597, DSM 14887, JCM 3867, NCIMB 8343, Thiobacillus concretivorus, Thiobacillus crenatus, Thiobacillus lobatus, Thiobacillus thermitanus, Thiobacillus thiooxidans, Thiobacillus umbonatus, Thiobacterium thiooxydans
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