Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A6M23_20105Hypothetical protein. (230 aa)    
Predicted Functional Partners:
Thyn1
Hypothetical protein.
       0.782
cyaY
Protein CyaY; Belongs to the frataxin family.
       0.773
A6M23_20100
Hypothetical protein.
       0.734
GCA_002079865_00806
Hypothetical protein.
    
   0.689
A6M23_19585
Hypothetical protein.
    
   0.689
GCA_002079865_03643
Hypothetical protein.
    
   0.689
recQ
ATP-dependent DNA helicase RecQ.
       0.581
A6M23_20130
Hypothetical protein.
       0.528
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical.
       0.528
A6M23_01575
Hypothetical protein.
    
   0.415
Your Current Organism:
Acidithiobacillus thiooxidans
NCBI taxonomy Id: 930
Other names: A. thiooxidans, ATCC 19377, CIP 104597, DSM 14887, JCM 3867, NCIMB 8343, Thiobacillus concretivorus, Thiobacillus crenatus, Thiobacillus lobatus, Thiobacillus thermitanus, Thiobacillus thiooxidans, Thiobacillus umbonatus, Thiobacterium thiooxydans
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