STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bicA_1Bicarbonate transporter BicA. (516 aa)    
Predicted Functional Partners:
ppsD
Phthiocerol synthesis polyketide synthase type I PpsD.
 
 
 0.946
A6M23_03210
Hypothetical protein.
    
   0.833
A6P07_10170
Hypothetical protein.
   
   0.829
nuoM_1
NADH-quinone oxidoreductase subunit M.
   
 
 0.827
nuoM_2
NADH-quinone oxidoreductase subunit M.
   
 
 0.827
GCA_002079865_01817
Hypothetical protein.
    
   0.826
qcrB
Cytochrome bc1 complex cytochrome b subunit.
    
   0.826
acpP_2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.763
acpP_4
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.763
sat/cysC
Putative bifunctional SAT/APS kinase.
   
  
 0.531
Your Current Organism:
Acidithiobacillus thiooxidans
NCBI taxonomy Id: 930
Other names: A. thiooxidans, ATCC 19377, CIP 104597, DSM 14887, JCM 3867, NCIMB 8343, Thiobacillus concretivorus, Thiobacillus crenatus, Thiobacillus lobatus, Thiobacillus thermitanus, Thiobacillus thiooxidans, Thiobacillus umbonatus, Thiobacterium thiooxydans
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