Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A6M23_01745 | A6M23_03195 | GCA_002079865_01354 | GCA_002079865_02461 | Hypothetical protein. | Hypothetical protein. | 0.900 |
A6M23_01745 | GCA_002079865_03773 | GCA_002079865_01354 | GCA_002079865_03773 | Hypothetical protein. | Hypothetical protein. | 0.911 |
A6M23_01745 | rfaC | GCA_002079865_01354 | GCA_002079865_02459 | Hypothetical protein. | Lipopolysaccharide heptosyltransferase 1. | 0.936 |
A6M23_01745 | rfaF | GCA_002079865_01354 | GCA_002079865_00221 | Hypothetical protein. | ADP-heptose--LPS heptosyltransferase 2. | 0.927 |
A6M23_01745 | waaA | GCA_002079865_01354 | GCA_002079865_02457 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.909 |
A6M23_03195 | A6M23_01745 | GCA_002079865_02461 | GCA_002079865_01354 | Hypothetical protein. | Hypothetical protein. | 0.900 |
A6M23_03195 | GCA_002079865_03773 | GCA_002079865_02461 | GCA_002079865_03773 | Hypothetical protein. | Hypothetical protein. | 0.900 |
A6M23_03195 | rfaC | GCA_002079865_02461 | GCA_002079865_02459 | Hypothetical protein. | Lipopolysaccharide heptosyltransferase 1. | 0.982 |
A6M23_03195 | rfaF | GCA_002079865_02461 | GCA_002079865_00221 | Hypothetical protein. | ADP-heptose--LPS heptosyltransferase 2. | 0.917 |
A6M23_03195 | waaA | GCA_002079865_02461 | GCA_002079865_02457 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.978 |
A6M23_15725 | kdsB | GCA_002079865_03527 | GCA_002079865_03523 | Hypothetical protein. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.854 |
A6M23_15725 | lpxK | GCA_002079865_03527 | GCA_002079865_03525 | Hypothetical protein. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.882 |
A6M23_15725 | lpxL_2 | GCA_002079865_03527 | GCA_002079865_02958 | Hypothetical protein. | Lipid A biosynthesis lauroyltransferase. | 0.930 |
A6M23_15725 | waaA | GCA_002079865_03527 | GCA_002079865_02457 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.939 |
GCA_002079865_03773 | A6M23_01745 | GCA_002079865_03773 | GCA_002079865_01354 | Hypothetical protein. | Hypothetical protein. | 0.911 |
GCA_002079865_03773 | A6M23_03195 | GCA_002079865_03773 | GCA_002079865_02461 | Hypothetical protein. | Hypothetical protein. | 0.900 |
GCA_002079865_03773 | rfaC | GCA_002079865_03773 | GCA_002079865_02459 | Hypothetical protein. | Lipopolysaccharide heptosyltransferase 1. | 0.915 |
GCA_002079865_03773 | rfaF | GCA_002079865_03773 | GCA_002079865_00221 | Hypothetical protein. | ADP-heptose--LPS heptosyltransferase 2. | 0.917 |
GCA_002079865_03773 | waaA | GCA_002079865_03773 | GCA_002079865_02457 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.909 |
arnT_2 | lpxK | GCA_002079865_03421 | GCA_002079865_03525 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.916 |
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