Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A6P07_19175 | slt_1 | GCA_002079865_02501 | GCA_002079865_02499 | 3-hydroxybenzoate synthase. | Soluble lytic murein transglycosylase. | 0.531 |
A6P07_19175 | sspB_2 | GCA_002079865_02501 | GCA_002079865_02500 | 3-hydroxybenzoate synthase. | Stringent starvation protein B. | 0.531 |
motB_1 | slt_1 | GCA_002079865_00494 | GCA_002079865_02499 | Motility protein B. | Soluble lytic murein transglycosylase. | 0.440 |
motB_2 | slt_1 | GCA_002079865_03267 | GCA_002079865_02499 | Motility protein B. | Soluble lytic murein transglycosylase. | 0.452 |
slt_1 | A6P07_19175 | GCA_002079865_02499 | GCA_002079865_02501 | Soluble lytic murein transglycosylase. | 3-hydroxybenzoate synthase. | 0.531 |
slt_1 | motB_1 | GCA_002079865_02499 | GCA_002079865_00494 | Soluble lytic murein transglycosylase. | Motility protein B. | 0.440 |
slt_1 | motB_2 | GCA_002079865_02499 | GCA_002079865_03267 | Soluble lytic murein transglycosylase. | Motility protein B. | 0.452 |
slt_1 | sspB_2 | GCA_002079865_02499 | GCA_002079865_02500 | Soluble lytic murein transglycosylase. | Stringent starvation protein B. | 0.811 |
slt_1 | uvrC | GCA_002079865_02499 | GCA_002079865_01370 | Soluble lytic murein transglycosylase. | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.434 |
sspB_2 | A6P07_19175 | GCA_002079865_02500 | GCA_002079865_02501 | Stringent starvation protein B. | 3-hydroxybenzoate synthase. | 0.531 |
sspB_2 | slt_1 | GCA_002079865_02500 | GCA_002079865_02499 | Stringent starvation protein B. | Soluble lytic murein transglycosylase. | 0.811 |
uvrC | slt_1 | GCA_002079865_01370 | GCA_002079865_02499 | UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Soluble lytic murein transglycosylase. | 0.434 |