STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrB_3Multidrug export protein EmrB. (210 aa)    
Predicted Functional Partners:
emrB_4
Multidrug export protein EmrB.
     0.988
emrK
Putative multidrug resistance protein EmrK.
 
 
 0.861
emrB_1
Multidrug export protein EmrB.
  
     0.771
oprM_2
Outer membrane protein OprM.
  
    0.615
oprM_4
Outer membrane protein OprM.
  
    0.576
cmpR_9
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
       0.548
aaeA
P-hydroxybenzoic acid efflux pump subunit AaeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.519
bmr3
Multidrug resistance protein 3; Belongs to the major facilitator superfamily.
  
     0.513
oprM_1
Outer membrane protein OprM.
  
    0.458
oprM_3
Outer membrane protein OprM.
  
    0.452
Your Current Organism:
Acidithiobacillus thiooxidans
NCBI taxonomy Id: 930
Other names: A. thiooxidans, ATCC 19377, CIP 104597, DSM 14887, JCM 3867, NCIMB 8343, Thiobacillus concretivorus, Thiobacillus crenatus, Thiobacillus lobatus, Thiobacillus thermitanus, Thiobacillus thiooxidans, Thiobacillus umbonatus, Thiobacterium thiooxydans
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