STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE75748.1DNA-binding transcriptional regulator, PadR family. (102 aa)    
Predicted Functional Partners:
SFE75768.1
Chromate transporter.
 
     0.818
SFE75375.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.702
SFE79071.1
RNA polymerase, sigma subunit, SigX; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.694
SFE61672.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
    0.646
SFE81044.1
Putative ABC transport system permease protein.
 
     0.422
SFE81023.1
Putative ABC transport system ATP-binding protein.
 
     0.411
Your Current Organism:
Alteribacillus iranensis
NCBI taxonomy Id: 930128
Other names: A. iranensis, Alteribacillus iranensis (Bagheri et al. 2012) Azmatunnisa Begum et al. 2016, Bacillus iranensis, Bacillus iranensis Bagheri et al. 2012, Bacillus sp. X5B(2010), DSM 23995, IBRC 10446, strain X5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.