STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE80807.1Spore germination protein KA. (524 aa)    
Predicted Functional Partners:
SFE80760.1
Germination protein, Ger(x)C family.
  
 0.925
SFE80789.1
Spore germination protein (amino acid permease).
 
  
 0.920
SFE32733.1
Stage V sporulation protein AD.
  
  
 0.787
SFE32709.1
Stage V sporulation protein AC.
  
    0.784
SFE61601.1
Stage II sporulation protein R.
 
    0.781
SFE73324.1
Germination protein, Ger(x)C family.
  
 0.779
SFE32759.1
Stage V sporulation protein AE.
  
    0.775
gpr
GPR endopeptidase Aspartic peptidase. MEROPS family A25; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.774
SFE31339.1
SpoIVB peptidase. Serine peptidase. MEROPS family S55.
  
     0.774
SFE40768.1
RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.774
Your Current Organism:
Alteribacillus iranensis
NCBI taxonomy Id: 930128
Other names: A. iranensis, Alteribacillus iranensis (Bagheri et al. 2012) Azmatunnisa Begum et al. 2016, Bacillus iranensis, Bacillus iranensis Bagheri et al. 2012, Bacillus sp. X5B(2010), DSM 23995, IBRC 10446, strain X5B
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