STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF06300.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (319 aa)    
Predicted Functional Partners:
SFE92686.1
Competence protein ComFC.
   
    0.639
SFE37830.1
Protein of unknown function.
  
     0.571
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.482
SFE96789.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.482
SFE73987.1
Protein of unknown function.
  
     0.478
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.461
SFF03384.1
Purine operon repressor, PurR.
   
    0.461
SFE54002.1
Protein of unknown function.
  
     0.432
SFE27379.1
Exonuclease RecJ.
  
  
 0.417
Your Current Organism:
Alteribacillus iranensis
NCBI taxonomy Id: 930128
Other names: A. iranensis, Alteribacillus iranensis (Bagheri et al. 2012) Azmatunnisa Begum et al. 2016, Bacillus iranensis, Bacillus iranensis Bagheri et al. 2012, Bacillus sp. X5B(2010), DSM 23995, IBRC 10446, strain X5B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.