STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV80015.1RNase J1. (557 aa)    
Predicted Functional Partners:
SEV81971.1
Ribonuclease J.
  
  
0.915
SEV80026.1
DNA-dependent RNA polymerase auxiliary subunit epsilon.
  
    0.882
SEV95172.1
mRNA degradation ribonuclease J1/J2.
  
  
  0.878
SEV82067.1
Ribonucrease Y.
  
 
 0.775
SEV81951.1
Polyribonucleotide nucleotidyltransferase.
 
  
 0.603
SEW08824.1
ATP-dependent RNA helicase DeaD.
   
  
 0.593
SEV92622.1
Ribonuclease P protein component.
    
 
 0.592
SEV80035.1
Peptide deformylase.
  
    0.517
SEV91869.1
4-hydroxy-tetrahydrodipicolinate synthase.
 
  
 0.514
SEV83619.1
Heptaprenyl diphosphate synthase.
  
    0.490
Your Current Organism:
Aliicoccus persicus
NCBI taxonomy Id: 930138
Other names: A. persicus, Aliicoccus persicus Amoozegar et al. 2014, CECT 8508, DSM 28306, IBRC-M 10081, Jeotgalicoccus sp. A76(2010), strain A76
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