STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV81062.1DNA-directed RNA polymerase subunit omega. (64 aa)    
Predicted Functional Partners:
SEV81046.1
Guanylate kinase.
  
  
 0.999
SEV96664.1
DNA-directed RNA polymerase subunit alpha.
  
 0.997
SEW06672.1
DNA-directed RNA polymerase subunit beta.
  
 0.995
SEW06686.1
DNA-directed RNA polymerase subunit beta'.
  
 0.991
SEV81731.1
SSU ribosomal protein S2P.
  
 0.982
SEV83452.1
ATP-dependent DNA helicase DinG.
   
 0.981
SEV81097.1
16S rRNA (cytosine967-C5)-methyltransferase.
  
 0.956
SEV84977.1
RNA polymerase primary sigma factor.
   
 0.940
SEV81862.1
NusA antitermination factor.
  
 0.938
SEV96458.1
LSU ribosomal protein L6P.
   
   0.931
Your Current Organism:
Aliicoccus persicus
NCBI taxonomy Id: 930138
Other names: A. persicus, Aliicoccus persicus Amoozegar et al. 2014, CECT 8508, DSM 28306, IBRC-M 10081, Jeotgalicoccus sp. A76(2010), strain A76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.