STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV85883.1S-adenosylmethionine--tRNA ribosyltransferase-isomerase. (340 aa)    
Predicted Functional Partners:
SEV85872.1
tRNA-guanine transglycosylase.
 
 0.998
SEV85900.1
Holliday junction DNA helicase subunit RuvB.
  
  
 0.951
SEV85914.1
Holliday junction DNA helicase subunit RuvA.
  
    0.927
SEV85845.1
Protein translocase subunit secF /protein translocase subunit secD.
  
  
 0.859
SEV85860.1
Protein translocase subunit yajC.
     
 0.847
SEV85926.1
GTP-binding protein.
       0.823
SEW19084.1
Epoxyqueuosine reductase.
 
  
 0.695
SEV85831.1
Exonuclease RecJ.
  
  
 0.667
SEV85937.1
LSU ribosomal protein L27P.
  
    0.600
SEV85953.1
Hypothetical protein.
       0.581
Your Current Organism:
Aliicoccus persicus
NCBI taxonomy Id: 930138
Other names: A. persicus, Aliicoccus persicus Amoozegar et al. 2014, CECT 8508, DSM 28306, IBRC-M 10081, Jeotgalicoccus sp. A76(2010), strain A76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.