STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV92588.1tRNA modification GTPase trmE. (459 aa)    
Predicted Functional Partners:
SEV92573.1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme.
 0.999
SEV92551.1
16S rRNA m(7)G-527 methyltransferase.
  
  
 0.968
SEV92622.1
Ribonuclease P protein component.
  
  
 0.871
SEV82581.1
GTP-binding protein.
    
 
 0.855
SEV92530.1
Effector of nucleoid occlusion Noc.
  
    0.847
SEW06585.1
LSU ribosomal protein L11P.
    
   0.846
SEV96526.1
LSU ribosomal protein L15P.
    
 
 0.844
SEV85965.1
LSU ribosomal protein L21P.
   
 
 0.834
SEV96115.1
LSU ribosomal protein L3P.
  
 
   0.831
SEV96834.1
LSU ribosomal protein L13P.
    
 
 0.828
Your Current Organism:
Aliicoccus persicus
NCBI taxonomy Id: 930138
Other names: A. persicus, Aliicoccus persicus Amoozegar et al. 2014, CECT 8508, DSM 28306, IBRC-M 10081, Jeotgalicoccus sp. A76(2010), strain A76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.