STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW08965.1sigma-B regulation protein RsbU (phosphoserine phosphatase). (336 aa)    
Predicted Functional Partners:
SEW08999.1
Serine/threonine-protein kinase RsbW.
 
 0.998
SEW08980.1
Anti-sigma B factor antagonist.
 
 0.997
SEW09018.1
RNA polymerase, sigma 37 subunit, RpsB/SigB.
 
 
 0.972
SEW08945.1
mRNA interferase MazF.
     
 0.679
SEW08929.1
Hypothetical protein.
       0.605
SEV87710.1
Uncharacterized protein YtpQ, UPF0354 family.
  
     0.580
SEW12625.1
Inner membrane protein.
  
    0.547
SEW19277.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 0.545
SEW08910.1
Alanine racemase.
  
    0.537
SEW09037.1
LSU ribosomal protein L11P.
       0.522
Your Current Organism:
Aliicoccus persicus
NCBI taxonomy Id: 930138
Other names: A. persicus, Aliicoccus persicus Amoozegar et al. 2014, CECT 8508, DSM 28306, IBRC-M 10081, Jeotgalicoccus sp. A76(2010), strain A76
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.